Article-Journal

Two Piwis with Ago-like functions silence somatic genes at the chromatin level

Most sRNA biogenesis mechanisms involve either RNAse III cleavage or ping-pong amplification by different Piwi proteins harbouring slicer activity. Here, we follow the question why …

franziska-drews
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Integrative analysis of epigenetics data identifies gene-specific regulatory elements

Understanding how epigenetic variation in non-coding regions is involved in distal gene-expression regulation is an important problem. Regulatory regions can be associated to genes …

florian-schmidt
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Dysregulation of cholesterol homeostasis in human lung cancer tissue and tumour-associated macrophages

BACKGROUND: Based on reports on elevated cholesterol levels in cancer cells, strategies to lower cholesterol synthesis have been suggested as an antitumour strategy. However, …

jessica-hoppstadter
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Machine learning based disease prediction from genotype data

Using results from genome-wide association studies for understanding complex traits is a current challenge. Here we review how genotype data can be used with different machine …

Nikoletta Katsaouni
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Computational prediction of CRISPR-impaired non-coding regulatory regions

Genome-wide CRISPR screens are becoming more widespread and allow the simultaneous interrogation of thousands of genomic regions. Although recent progress has been made in the …

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Nina Baumgarten
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Fast detection of differential chromatin domains with SCIDDO

MOTIVATION: The generation of genome-wide maps of histone modifications using chromatin immunoprecipitation sequencing is a standard approach to dissect the complexity of the …

peter-ebert
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Fostering accessible online education using Galaxy as an e-learning platform

The COVID-19 pandemic is shifting teaching to an online setting all over the world. The Galaxy framework facilitates the online learning process and makes it accessible by …

beatriz-serrano-solano
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SPONGEdb: a pan-cancer resource for competing endogenous RNA interactions

microRNAs (miRNAs) are post-transcriptional regulators involved in many biological processes and human diseases, including cancer. The majority of transcripts compete over a …

markus-hoffmann
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A hierarchical regulatory network analysis of the vitamin D induced transcriptome reveals novel regulators and complete VDR dependency in monocytes

The transcription factor vitamin D receptor (VDR) is the high affinity nuclear target of the biologically active form of vitamin D3 (1,25(OH)2D3). In order to identify pure genomic …

Dr. Timothy Warwick
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