DOT1L regulates chamber-specific transcriptional networks during cardiogenesis and mediates postnatal cell cycle withdrawal
1 December 2022·,
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0 min read
Paola Cattaneo
Michael G. B. Hayes
Nina Baumgarten
Dennis Hecker
Sofia Peruzzo
Galip S. Aslan
Paolo Kunderfranco
Veronica Larcher
Lunfeng Zhang
Riccardo Contu
Gregory Fonseca
Simone Spinozzi
Ju Chen
Gianluigi Condorelli
Stefanie Dimmeler
Marcel H. Schulz
Sven Heinz
Nuno Guimarães-Camboa
Sylvia M. Evans
Abstract
Mechanisms by which specific histone modifications regulate distinct gene networks remain little understood. We investigated how H3K79me2, a modification catalyzed by DOT1L and previously considered a general transcriptional activation mark, regulates gene expression during cardiogenesis. Embryonic cardiomyocyte ablation of Dot1l revealed that H3K79me2 does not act as a general transcriptional activator, but rather regulates highly specific transcriptional networks at two critical cardiogenic junctures: embryonic cardiogenesis, where it was particularly important for left ventricle-specific genes, and postnatal cardiomyocyte cell cycle withdrawal, with Dot1L mutants having more mononuclear cardiomyocytes and prolonged cardiomyocyte cell cycle activity. Mechanistic analyses revealed that H3K79me2 in two distinct domains, gene bodies and regulatory elements, synergized to promote expression of genes activated by DOT1L. Surprisingly, H3K79me2 in specific regulatory elements also contributed to silencing genes usually not expressed in cardiomyocytes. These results reveal mechanisms by which DOT1L successively regulates left ventricle specification and cardiomyocyte cell cycle withdrawal.
Type
Publication
Nature Communications

Authors
Nina Baumgarten
(she/her)
Postdoc
I am a bioinformatician with a diverse background in analyzing genetic and epigenetic data. I have had the chance to work on a variety of projects since I joined the lab, like decoding the effect of non-coding variations, analysing GWAS data, and studying TF binding. Recently, my focus has been shifted toward spatial transcriptomics, which allows me to map genetic findings directly onto tissue architecture. I am motivated by the possibility that these data-driven insights might lead to a better understanding of complex diseases. In my free time, I love spending time in nature for hiking—it’s where the best ideas come to me!

Authors
Dennis Hecker
(he/him)
Postdoc
I am a biologist by training that turned into a bioinformatician for the PhD. Since starting in the SchulzLab, I have been working on analysing a variety of data and their integration with a focus on the epignome, specifically interactions between regulatory regions and genes. I also have a love-hate relationship with chromatin contact data. What keeps me going is the variety of research questions that we work on to know more about human biology and its use in medicine. I am a big fan of Python and coffee.