TF-Prioritizer: a Java pipeline to prioritize condition-specific transcription factors

1 May 2023·
Markus Hoffmann
,
Nico Trummer
,
Leon Schwartz
,
Jakub Jankowski
,
Hye Kyung Lee
,
Lina-Liv Willruth
,
Olga Lazareva
,
Kevin Yuan
Nina Baumgarten
Nina Baumgarten
,
Florian Schmidt
,
Jan Baumbach
,
Marcel H Schulz
,
David B Blumenthal
,
Lothar Hennighausen
,
Markus List
· 0 min read
Type
Publication
GigaScience
publications
Nina Baumgarten
Authors
Postdoc
I am a bioinformatician with a diverse background in analyzing genetic and epigenetic data. I have had the chance to work on a variety of projects since I joined the lab, like decoding the effect of non-coding variations, analysing GWAS data, and studying TF binding. Recently, my focus has been shifted toward spatial transcriptomics, which allows me to map genetic findings directly onto tissue architecture. I am motivated by the possibility that these data-driven insights might lead to a better understanding of complex diseases. In my free time, I love spending time in nature for hiking—it’s where the best ideas come to me!