Tools
Here you can find an overview of all computational tools developed in our lab.
FAME
Software for the alignment and CpG methylation quantification
STITCHIT
Software for learning gene-specific regulatory elements
EpiRegio
Resource of Regulatory EleMents (REMs)
ORNA
Read normalization (reduction) software
TEPIC
Software package for TF binding affinity prediction
KREATION
Meta-software for parameter selection for de novo transcriptome assemblers
Fiona
Genome read error correction method
SEECER
Read error correction method
DREM 2.0
Method to reconstruct dynamic maps of TF regulation
Oases
De novo transcriptome assembler
ALF
Toolbox of alignment-free sequence similarity measures
SplazerS
Split-read indel alignment method
Phenomizer
Online webservice for clinical diagnosis